Genes for which the log 2 fold change is 0 are not included. For all differential experiments, click on the button to download all the analytics in the experiment. For single-channel microarray experiments you can download the normalized intensities using the button. For two-channel microarray experiments you can download the log 2 fold changes using the button. For RNA-seq experiments you can download the raw counts generated by htseq-count using the button.
You can also download data ready to load into R by clicking the icon. See our help page about Expression Atlas data in R for more details. We have been listening to feedback from the ENA user community and are pleased to announce that we now offer two tools to make retrieving data from ENA much easier. There are two main tools within this suite: enaDataGet and enaGroupGet. This tool will download all data for a given sequence, assembly, WGS set, run, experiment or analysis accession.
When downloading an assemby, read, experiment or analysis, a new directory will be created to hold all the files.
This tool will allow you to download all data of a particular group sequence, WGS, assembly, read or analysis for a given sample or study accession. Download the read data in FASTQ format for the Local surveillance of infectious diseases and antimicrobial resistance from sewage project:. This application will be familiar for users of the bulk download tool within the ENA Browser. You can download files via two methods:. We are particularly excited about the second option as it now allows you to define a set of data that is of interest to you, such as finding all reads available for a given tax ID, and share this report with collaborators, knowing that everyone will be able to easily download exactly the same set of files.
Both of these new tools are available in public GitHub repositories. You can download the latest code available at the time, but we recommend visiting the Releases section for the lastest release.
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